pathmatrix: a geographical information system tool to compute effective distances among samples

pathmatrix is a tool used to compute matrices of effective geographical distances among samples using a least‐cost path algorithm. This program is dedicated to the study of the role of the environment on the spatial genetic structure of populations. Punctual locations (e.g. individuals) or zones encompassing sample data points (e.g. demes) are used in conjunction with a species‐specific friction map representing the cost of movement through the landscape. Matrices of effective distances can then be exported to population genetic software to test, for example, for isolation by distance. pathmatrix is an extension to the geographical information system (GIS) software arcview 3.x.     

Geographical distributions,relative abundance and coexistence of Drosophila aldrichi and Drosophila buzzatii in Australia

Abstract Climatic data and collection records for the cactophilic Drosophila aldrichi and Drosophila buzzatii for 97 localities were used to examine the effects of geographical location, season, host plant species and climatic factors on their range and relative abundance. Temporal variation in relative abundance was assessed from monthly collections over 4 years at one locality. Effects of weather variables over the 28 days before each collection were examined. A generalized linear model of the spatial data showed significant geographical variation in relative abundance, and significant climatic effects, with the proportion of D. aldrichi higher in the warm season, and increasing as temperature variation decreased and moisture indices increased. The temporal data gave generally concordant results, as D. aldrichi proportion was higher in summer and autumn, and increased as maximum and minimum temperatures increased, and as variation in maximum temperature decreased. In a laboratory competition experiment, D. aldrichi eliminated D. buzzatii at 31°C, but was itself eliminated at 18°C and 25°C. The range of D. buzzatii is constrained only by availability of its host plant, Opuntia species, although its relative abundance is reduced in the northern part of its distribution. The range of D. aldrichi, from central Queensland to northern NSW, Australia, is entirely within that of D. buzzatii, and its relative abundance decreases from north to south. Both climate and weather, particularly temperature variability, have direct effects on the relative abundances of the two species, and both likely act indirectly by influencing the outcome of interspecific competition.     

Population genetic structure and germplasm conservation of Stipa purpurea on Qinghai-Tibetan Plateau under grazing

At what intensity the grazing should be practiced on the Qinghai-Tibetan Plateau in China is always confusing farmers, scientists and policy makers for a long time owing to its geographical exception. In order to develop a strategy for sustainable grazing management, we used the dominant Stipa purpurea as a model species to detect genetic diversity and fine spatial structure under different grazing intensities. Intra-population neutral genetic diversity in non-grazed population was significantly higher than three grazed populations; however, the highest value among grazed populations appeared in the moderately grazed population. A relatively low degree of genetic differentiation among populations by AMOVA analysis and a high level of gene flow existed among populations (Gst = 0.2649, Nm = 1.3875 〉 1). The genetic ‘patch’ size increased from 4 m to 16 m and subpopulation number within the S. purpurea populations ranged from 7 to 5 with increasing grazing intensity, therefore grazing will be beneficial to reduce the fragmentation and to increase the population-level adaptation. Though enclosure or no grazing is the best protection of plant germplasm like wind-pollination S. purpurea, moderate grazing is better strategy for grassland use on the Qinghai-Tibetan Plateau.     

Impaired spermatogenesis associated with changes in spatial arrangement of Sertoli and spermatogonial cells following induced diabetes

The current study was conducted to assess the relationship between testicular cells in spermatogenesis, through which the production of healthy and mature sperm is essential. However, it seems necessary to obtain more information about the three-dimensional pattern of the testis cells arrangement, which is directly related to the function of the testis after induction of diabetes. Twelve adult mice (28-30 g) were assigned into two experimental groups: (1) control and (2) diabetic (40 mg/kg STZ). The epididymal sperm collected from the tail of the epididymis and testes samples were taken for stereology, immunocytochemistry and RNA extraction. Our data showed that diabetes could notably decrease the number of testicular cells, together with a reduction of total sperm count. In addition, the results from the second-order stereology indicated the significant changes in the spatial arrangement of Sertoli cells and spermatogonial cells in the diabetic groups, in comparison with the control (P < .05). Moreover, the immunohistochemistry results showed a significant reduction in Sex-determining Region Y (SRY) box 9 gene (SOX9), vimentin, occludin, and connexin-43 positive cells in the diabetic groups compared with the control (P < .05). Furthermore, our data showed that the expression of steroidogenic acute regulatory protein steroidogenic acute regulatory protein (StAR) and peripheral benzodiazepine receptor peripheral benzodiazepine receptor (PBR) was significantly reduced in the diabetic groups, in comparison with the control (P < .05). These findings suggest that structural and functional changes of testis cells after induction of diabetes cause the alterations in the spatial arrangement of Sertoli and spermatogonial cells, ultimately influencing the normal spermatogenesis in mice.     

退耕还林还草工程对陕北地区生态系统服务价值时空演变的影响

基于陕北地区1990、2000、2015年土地利用数据，运用单位面积生态系统价值当量因子法、格网法、探索性空间数据法（ESDA），分析了退耕还林还草工程实施前后生态系统服务价值（ESV）的空间分布和演化规律，探讨了退耕还林还草工程对ESV的影响。结果表明：（1）陕北地区退耕还林还草工程实施效果显著，工程实施后共有297066.15 hm2耕地转化为林地和草地，林草覆盖率由57.33%增长至60.50%。（2）退耕还林还草工程使得陕北地区ESV得到了显著提升。25年间陕北地区ESV共增加了32.82亿元，ESV在工程实施后比工程实施前多增加了5.93亿元，增长主要源于退耕引起林地和草地面积的增加。（3）ESV空间分布上呈显著的“南高北低”分布格局，并表现出正向的集聚性和依存性，ESV热点区和冷点区集聚效果明显，热点区集聚与林地、草地的空间分布相吻合，冷点区集聚与未利用地、耕地和建设用地的空间分布相吻合。（4）受退耕还林还草工程影响，陕北地区中部中等等级和次高ESV分布区域逐渐增大、次热点区空间集聚性逐渐增强，北部次低等级和低等级ESV分布区域逐渐减少、冷点区空间集聚性逐渐减弱。整体而言，陕北地区土地利用类型转移和ESV的增减变化与推行退耕还林还草工程在时间上相呼应、在空间上相匹配，退耕还林还草工程实施使得陕北地区生态环境得到了有效改善，ESV得到了显著提升。     

基于文献计量的城市空间结构与生态环境关联性研究

以Web of Science核心合集中1999-2020年期间发表的城市空间结构与生态环境关联性的文献为研究样本，运用文献计量的方法，主要借助VOSviewer和Citespace软件，厘清该领域研究的主要特征与进展。研究结果表明：城市空间结构与生态环境关联性研究的文献总量上呈现波动上升的趋势，尤其在近五年的波动骤增态势十分显著，成为地理学、城乡规划学、环境与生态学等学科交叉融合研究的重要方向之一；研究内容主要聚焦于城市空间结构与大气环境的关联性机理，具体涉及温室气体排放、空气污染和城市热岛效应，同时水环境、土壤环境以及生物多样性等方面也越来越受到重视而逐步成为研究热点。未来可围绕构建两者关联性框架和评估体系、面向生态环境问题的城市空间结构优化设计、两者发展变化的模拟和预测等核心问题展开研究。